48 The formal referral to the AFP nominated four ATO contact officers (Mr Brown, Mr Farr, Mr Bowyer and Ms Bonthorne). Mr O'Neill was not nominated as a contact officer.
49 Mr O'Neill's memorandum to the Commissioner of 18 March 1999 (together with annexures) accompanied the letter of referral to the AFP of 29 March 1999, together with a number of other documents.
50 It was Mr O'Neill's evidence that he was unaware of the referral by Mr Brown to the AFP until after it had occurred. He said that he had played no part either in the instigation of the referral or in its terms (PT520, 2005).
51 On 23 April 1999, Federal Agents Wills, Wildman and Dametto met with Mr Brown concerning the investigation. Entries contained in the running sheets of Operation Focaccia (the AFP PROMIS case report) (Exhibit VR2, Tabs 2 and 9) were referred to in evidence and submissions.
52 On 28 April 1999, Mr O'Neill and Mr Cheetham from the ATO met with Federal Agents Wills, Wildman and others in the presence of Mr Brown. Recorded in the PROMIS running sheets is the following entry concerning that meeting (Exhibit VR2, Tab 2, page 8):
"MICHAEL O'NEILL stated that there would be no circumstances under which the ATO would issue a PBR which would result in a total tax wipe out for a company. It appears that PETROULIAS has in fact issued PBRs which result in a total tax wipe out. O'NEILL can state that he has looked for and can not find the suspicious PBR applications. He is able produce [sic] documents which appear to have been compiled using cut and paste actions, with the above mentioned typographical errors, incorrect or recurring TFNs which suggest that PETROULIAS may have generated the PBRs."
53 On 5 May 1999, Mr O'Neill was asked for an assessment of the impact and financial loss to the Commonwealth (Exhibit VR2, Tab 2, page 14).
54 Between February and May 1999, Mr O'Neill retained his offices in the ATO Centrepoint building, but spent time, from time to time, at the AFP building in Goulburn Street, Sydney. From May 1999, Mr O'Neill, and other ATO personnel, were located full time in offices in the AFP Goulburn Street building with respect to an investigation apart from Operation Foccacia. From time to time, he was called upon by AFP investigators in relation to issues arising in the Operation Foccacia investigation of the Accused (PT691-692, 2007).
55 On 17 June 1999, the first search warrants were executed as part of the Operation Focaccia investigation.
56 On 15 July 1999, Mr O'Neill met with Federal Agent Wildman and provided him with the draft document entitled "Estimate of Revenue Associated With Arrangements Considered by Nick Petroulias". The PROMIS running sheet entry for that meeting records the following (Exhibit VR2, Tab 2, pages 40-41):
"Between 4pm and 7pm Thursday 15 July 1999, F/A WILDMAN met with ATO First Assistant Commissioner O'NEILL at ERHQ. During that time his draft statement was continued with a view toward finalization. O'NEILL provided WILDMAN with a draft document entitled, 'Estimate of revenue associated with arrangements considered by Nick PETROULIAS'.
A summary of that document is as follows:
In March 1999, the SIA advised the AFP that the total deductions was $500 million;
Those figures were based on data for 1998 and during 1999 there has been increased marketing of these schemes; accordingly the figures could be much higher;
Additionally, the promoters on which the figures were based are a subset of the total population;
Based on an analysis of known promoters and the media, a reasonable estimate involves up to $2.5 billion in deductions;
The revenue at risk is therefore harder to quantify, depending on the type of tax claimed on the schemes (ie: company @ 36% etc);
In relation to rulings issued to Strong, Morgan, X & McLaren it is estimated that the deductions claimed would be in the order of $50-$100 million, similarly the revenue at risk is harder to quantify, depending on the type of tax claimed on the schemes (possibly $15-$30 million);
If the X arrangement is included, the figures could be increased by $100 million and $30 million respectively.
In conclusion, the estimated loss of revenue to the Commonwealth, due to the mass marketing of 'copy cat' schemes of original PBRs and AOs, could be between $600 million and $800 million. The direct loss of revenue from the actual PBRs and AOs issued by Nick PETROULIAS themselves is however, far less. It is the view of investigators that, with the level of knowledge possessed by PETROULIAS, there can by [sic] little doubt that he would not have foreseen the consequences of his actions and the associated full potential loss of revenue due to the flow on effect."
57 On 27 July 1999, Federal Agent Dametto swore an affidavit in support of an application for a warrant under the Telecommunications (Interception) Act 1979 (Cth) ("TI Act"). On the same day, Dr Duncan Chappell issued a warrant to operate for a 90-day period (Exhibit VA1, Tab 3). As mentioned earlier, the six telephone conversations in September and October 1999, which are to be tendered by the Crown, were intercepted pursuant to this warrant.
58 The affidavit of Federal Agent Dametto included the following paragraphs:
"5. The information set out below has been obtained from my own enquiries and from enquiries made by other officers of the AFP and officers of the ATO. I believe that the information is true and correct.